Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370564


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M34Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.3923 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
3 ENSMUSG00000112081 Gm9004 predicted gene 9004 3.3219 0.0009
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0095
5 ENSMUSG00000062524 Ncr1 natural cytotoxicity triggering receptor 1 2.5850 0.0207
6 ENSMUSG00000067276 Capn6 calpain 6 2.5850 0.0207
7 ENSMUSG00000105967 Gm47298 predicted gene, 47298 2.5850 0.0207
8 ENSMUSG00000098666 Mir6950 microRNA 6950 2.4534 0.0009
9 ENSMUSG00000025525 Apool apolipoprotein O-like 2.3219 0.0450
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000025911 Adhfe1 alcohol dehydrogenase, iron containing, 1 -1.3533 0.0000
50599 ENSMUSG00000035983 Gm7008 predicted gene 7008 -1.3521 0.0000
50598 ENSMUSG00000099221 Mir6371 microRNA 6371 -1.3510 0.0092
50597 ENSMUSG00000021728 Emb embigin -1.3504 0.0000
50596 ENSMUSG00000097575 Gm26796 predicted gene, 26796 -1.3502 0.0000
50595 ENSMUSG00000048349 Pou4f1 POU domain, class 4, transcription factor 1 -1.3493 0.0000
50593 ENSMUSG00000023972 Ptk7 PTK7 protein tyrosine kinase 7 -1.3490 0.0000
50592 ENSMUSG00000045598 Zfp553 zinc finger protein 553 -1.3483 0.0000
50591 ENSMUSG00000038014 Fam120a family with sequence similarity 120, member A -1.3482 0.0000
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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