Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370565


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M35Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8580 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0002
3 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.5850 0.0010
4 ENSMUSG00000015405 Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 3.0000 0.0156
5 ENSMUSG00000103125 Gm37388 predicted gene, 37388 3.0000 0.0156
6 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.0000 0.0156
7 ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 2.8074 0.0005
8 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.7618 0.0000
9 ENSMUSG00000078932 CN725425 cDNA sequence CN725425 2.6610 0.0001
10 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.6591 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000029403 Cdkl2 cyclin-dependent kinase-like 2 (CDC2-related kinase) -1.3582 0.0000
50599 ENSMUSG00000065555 Mir219a-1 microRNA 219a-1 -1.3575 0.0000
50598 ENSMUSG00000069495 Epc2 enhancer of polycomb homolog 2 -1.3563 0.0000
50597 ENSMUSG00000093581 Gm18006 predicted gene, 18006 -1.3560 0.0000
50596 ENSMUSG00000051413 Plagl2 pleiomorphic adenoma gene-like 2 -1.3543 0.0000
50595 ENSMUSG00000097819 Gm26813 predicted gene, 26813 -1.3539 0.0000
50594 ENSMUSG00000031709 Tbc1d9 TBC1 domain family, member 9 -1.3537 0.0000
50593 ENSMUSG00000025103 Btbd1 BTB (POZ) domain containing 1 -1.3537 0.0000
50592 ENSMUSG00000085139 A730046J19Rik RIKEN cDNA A730046J19 gene -1.3536 0.0106
50591 ENSMUSG00000038975 Rabggtb Rab geranylgeranyl transferase, b subunit -1.3532 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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