Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370567


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M37Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.5850 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.5850 0.0000
4 ENSMUSG00000100315 1700031P21Rik RIKEN cDNA 1700031P21 gene 3.0000 0.0000
5 ENSMUSG00000053678 Defb40 defensin beta 40 2.8774 0.0000
6 ENSMUSG00000064570 Gm25800 predicted gene, 25800 2.8074 0.0044
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0044
8 ENSMUSG00000103625 Gm37357 predicted gene, 37357 2.8074 0.0044
9 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.6240 0.0000
10 ENSMUSG00000065253 Gm23970 predicted gene, 23970 2.5850 0.0109

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000107915 Gm44014 predicted gene, 44014 -1.4196 0.0000
50599 ENSMUSG00000091071 1700030C10Rik RIKEN cDNA 1700030C10 gene -1.4181 0.0000
50598 ENSMUSG00000107948 AA545190 EST AA545190 -1.4178 0.0023
50597 ENSMUSG00000041380 Htr2c 5-hydroxytryptamine (serotonin) receptor 2C -1.4178 0.0023
50596 ENSMUSG00000021690 Jmy junction-mediating and regulatory protein -1.4178 0.0000
50595 ENSMUSG00000000399 Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 -1.4178 0.0023
50594 ENSMUSG00000093618 Mir5627 microRNA 5627 -1.4167 0.0000
50593 ENSMUSG00000014905 Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 -1.4167 0.0000
50592 ENSMUSG00000033454 Zbtb1 zinc finger and BTB domain containing 1 -1.4143 0.0000
50591 ENSMUSG00000071181 3830408C21Rik RIKEN cDNA 3830408C21 gene -1.4135 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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