Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370568


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M38Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.2479 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.0000 0.0048
3 ENSMUSG00000111982 Gm35135 predicted gene, 35135 2.5850 0.0005
4 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0473
5 ENSMUSG00000095331 Ptma-ps1 prothymosin alpha, pseudogene 1 2.3219 0.0473
6 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.3219 0.0473
7 ENSMUSG00000110999 Olfr1075-ps1 olfactory receptor 1075, pseudogene 1 2.3219 0.0022
8 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.1699 0.0153
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.0620 0.0000
10 ENSMUSG00000091028 Gm10722 predicted gene 10722 2.0026 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000021258 Ccnk cyclin K -1.2010 0.0000
50599 ENSMUSG00000024283 Wac WW domain containing adaptor with coiled-coil -1.2010 0.0000
50598 ENSMUSG00000020869 Lrrc59 leucine rich repeat containing 59 -1.2001 0.0000
50597 ENSMUSG00000088889 Gm24211 predicted gene, 24211 -1.2001 0.0000
50596 ENSMUSG00000055341 Zfp457 zinc finger protein 457 -1.2000 0.0002
50595 ENSMUSG00000051177 Plcb1 phospholipase C, beta 1 -1.2000 0.0000
50594 ENSMUSG00000027677 Ttc14 tetratricopeptide repeat domain 14 -1.1999 0.0000
50593 ENSMUSG00000075232 Amd1 S-adenosylmethionine decarboxylase 1 -1.1995 0.0000
50592 ENSMUSG00000031988 Vps26b VPS26 retromer complex component B -1.1995 0.0000
50591 ENSMUSG00000051695 Pcbp1 poly(rC) binding protein 1 -1.1993 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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