Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370569

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370569


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M39Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 6.2668 0.0000
2 ENSMUSG00000101242 Gm28319 predicted gene 28319 4.5850 0.0000
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.3219 0.0000
4 ENSMUSG00000084441 Gm26255 predicted gene, 26255 3.7004 0.0000
5 ENSMUSG00000101818 Gm28269 predicted gene 28269 3.5850 0.0001
6 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 3.3219 0.0005
7 ENSMUSG00000108303 Gm39075 predicted gene, 39075 3.1699 0.0013
8 ENSMUSG00000112613 Gm48175 predicted gene, 48175 3.1699 0.0013
9 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 3.0000 0.0029
10 ENSMUSG00000108262 Gm43867 predicted gene, 43867 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000024566 Atp9b ATPase, class II, type 9B -1.4815 0.0000
50599 ENSMUSG00000034757 Tmub2 transmembrane and ubiquitin-like domain containing 2 -1.4811 0.0000
50598 ENSMUSG00000108719 Gm44757 predicted gene 44757 -1.4809 0.0000
50597 ENSMUSG00000100084 2310068J16Rik RIKEN cDNA 2310068J16 gene -1.4794 0.0000
50596 ENSMUSG00000097025 Gm26558 predicted gene, 26558 -1.4782 0.0000
50595 ENSMUSG00000111337 Gm6885 predicted gene 6885 -1.4756 0.0000
50594 ENSMUSG00000051228 Nyx nyctalopin -1.4726 0.0000
50593 ENSMUSG00000099632 2900093K20Rik RIKEN cDNA 2900093K20 gene -1.4719 0.0000
50592 ENSMUSG00000097523 1700022N22Rik RIKEN cDNA 1700022N22 gene -1.4713 0.0000
50591 ENSMUSG00000004473 Clec11a C-type lectin domain family 11, member a -1.4710 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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