Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370570


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M40Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.7549 0.0000
2 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.4594 0.0000
3 ENSMUSG00000095737 Igkv11-125 immunoglobulin kappa variable 11-125 3.1699 0.0006
4 ENSMUSG00000102134 Gm9931 predicted gene 9931 3.1699 0.0006
5 ENSMUSG00000031712 Il15 interleukin 15 3.0000 0.0016
6 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.9290 0.0000
7 ENSMUSG00000069014 Gm5641 predicted gene 5641 2.8074 0.0039
8 ENSMUSG00000088362 Gm23498 predicted gene, 23498 2.8074 0.0039
9 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.6240 0.0000
10 ENSMUSG00000081731 Calr-ps calreticulin, pseudogene 2.5850 0.0099

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000097271 Gm9903 predicted gene 9903 -1.3294 0.0000
50599 ENSMUSG00000024537 Psmg2 proteasome (prosome, macropain) assembly chaperone 2 -1.3289 0.0000
50598 ENSMUSG00000020257 Wdr82 WD repeat domain containing 82 -1.3289 0.0000
50597 ENSMUSG00000108693 Gm45153 predicted gene 45153 -1.3284 0.0000
50596 ENSMUSG00000086279 Gm15634 predicted gene 15634 -1.3284 0.0000
50595 ENSMUSG00000065676 Snord42b small nucleolar RNA, C/D box 42B -1.3279 0.0000
50594 ENSMUSG00000039967 Zfp292 zinc finger protein 292 -1.3274 0.0000
50593 ENSMUSG00000025747 Tyms thymidylate synthase -1.3268 0.0000
50592 ENSMUSG00000085321 4930412F09Rik RIKEN cDNA 4930412F09 gene -1.3265 0.0000
50591 ENSMUSG00000020108 Ddit4 DNA-damage-inducible transcript 4 -1.3264 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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