Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370573


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M43Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 6.5546 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 5.2095 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 5.2095 0.0000
4 ENSMUSG00000101818 Gm28269 predicted gene 28269 4.5850 0.0000
5 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.4085 0.0000
6 ENSMUSG00000099582 Gm29014 predicted gene 29014 3.7004 0.0000
7 ENSMUSG00000076481 Trbv30 T cell receptor beta, variable 30 3.3219 0.0005
8 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.2696 0.0000
9 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.0646 0.0000
10 ENSMUSG00000043865 Tas2r118 taste receptor, type 2, member 118 3.0000 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000027405 Nop56 NOP56 ribonucleoprotein -1.3611 0.0000
50599 ENSMUSG00000048920 Fkrp fukutin related protein -1.3606 0.0000
50598 ENSMUSG00000004317 Clcn5 chloride channel, voltage-sensitive 5 -1.3604 0.0000
50597 ENSMUSG00000106978 N4bp2os NEDD4 binding protein 2, opposite strand -1.3601 0.0000
50596 ENSMUSG00000044854 1700056E22Rik RIKEN cDNA 1700056E22 gene -1.3597 0.0000
50595 ENSMUSG00000001823 Hoxd12 homeobox D12 -1.3590 0.0000
50594 ENSMUSG00000042477 Tfap2e transcription factor AP-2, epsilon -1.3588 0.0000
50593 ENSMUSG00000108233 Gm44084 predicted gene, 44084 -1.3585 0.0000
50592 ENSMUSG00000049323 Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) -1.3585 0.0001
50591 ENSMUSG00000091537 Tma7 translational machinery associated 7 -1.3580 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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