Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370574


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M44Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 4.6439 0.0000
2 ENSMUSG00000084441 Gm26255 predicted gene, 26255 3.8074 0.0000
3 ENSMUSG00000054641 Mmrn1 multimerin 1 3.1699 0.0020
4 ENSMUSG00000078784 Rbis ribosomal biogenesis factor 3.1699 0.0000
5 ENSMUSG00000089309 Gm24838 predicted gene, 24838 3.0222 0.0000
6 ENSMUSG00000059106 Olfr961 olfactory receptor 961 2.8074 0.0096
7 ENSMUSG00000103667 Ighv1-8 immunoglobulin heavy variable V1-8 2.8074 0.0096
8 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.8074 0.0096
9 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.7740 0.0000
10 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000022992 Kansl2 KAT8 regulatory NSL complex subunit 2 -1.3393 0.0000
50599 ENSMUSG00000080573 Mir467f microRNA 467f -1.3378 0.0000
50598 ENSMUSG00000041716 Gm20604 predicted gene 20604 -1.3377 0.0000
50597 ENSMUSG00000034731 Dgkh diacylglycerol kinase, eta -1.3374 0.0000
50596 ENSMUSG00000086279 Gm15634 predicted gene 15634 -1.3365 0.0000
50595 ENSMUSG00000080799 Gm15166 predicted gene 15166 -1.3360 0.0000
50594 ENSMUSG00000051154 Commd3 COMM domain containing 3 -1.3360 0.0000
50593 ENSMUSG00000001289 Pfdn5 prefoldin 5 -1.3336 0.0000
50592 ENSMUSG00000064871 Snord58b small nucleolar RNA, C/D box 58B -1.3335 0.0000
50591 ENSMUSG00000064844 Gm26202 predicted gene, 26202 -1.3335 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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