Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1413827

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1413827


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M45Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS, deeper sequencing)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000103382 Gm37755 predicted gene, 37755 3.5090 0.0000
2 ENSMUSG00000073916 Olfr669 olfactory receptor 669 3.1699 0.0000
3 ENSMUSG00000075119 Olfr1197 olfactory receptor 1197 3.1699 0.0000
4 ENSMUSG00000081487 Gm13689 predicted gene 13689 3.1699 0.0000
5 ENSMUSG00000088157 Gm26351 predicted gene, 26351 3.1699 0.0000
6 ENSMUSG00000103377 Gm37180 predicted gene, 37180 3.1699 0.0000
7 ENSMUSG00000089563 Gm24667 predicted gene, 24667 3.0850 0.0000
8 ENSMUSG00000100672 Gm28404 predicted gene 28404 3.0850 0.0000
9 ENSMUSG00000063656 Gm10135 predicted gene 10135 3.0112 0.0000
10 ENSMUSG00000088268 Gm24776 predicted gene, 24776 3.0112 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000060969 Irx1 Iroquois homeobox 1 -2.3640 0.0000
50599 ENSMUSG00000044526 Znrf4 zinc and ring finger 4 -2.3639 0.0000
50598 ENSMUSG00000028271 Gtf2b general transcription factor IIB -2.3633 0.0000
50597 ENSMUSG00000033213 AA467197 expressed sequence AA467197 -2.3628 0.0000
50596 ENSMUSG00000047844 Bex4 brain expressed X-linked 4 -2.3628 0.0628
50595 ENSMUSG00000034883 Lrr1 leucine rich repeat protein 1 -2.3619 0.0000
50594 ENSMUSG00000035725 Prkx protein kinase, X-linked -2.3616 0.0000
50593 ENSMUSG00000081557 Gm5697 predicted gene 5697 -2.3615 0.0000
50592 ENSMUSG00000112843 Gm46224 predicted gene, 46224 -2.3613 0.0045
50591 ENSMUSG00000081056 Gm13998 predicted gene 13998 -2.3609 0.0430

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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