Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1413828

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1413828


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M46Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS, deeper sequencing)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000073448 Gm10509 predicted gene 10509 3.1699 0.0000
2 ENSMUSG00000107683 Gm44139 predicted gene, 44139 3.1699 0.0000
3 ENSMUSG00000108250 Tas2r111-ps2 taste receptor, type 2, member 111, pseudogene 2 3.1699 0.0000
4 ENSMUSG00000092199 Gm18358 predicted gene, 18358 2.8906 0.0000
5 ENSMUSG00000079271 1700049E17Rik1 RIKEN cDNA 1700049E17 gene, gene 1 2.8219 0.0000
6 ENSMUSG00000076958 Gm24935 predicted gene, 24935 2.8074 0.0000
7 ENSMUSG00000079521 Gm5938 predicted gene 5938 2.8074 0.0000
8 ENSMUSG00000097966 Gm9423 predicted gene 9423 2.8074 0.0000
9 ENSMUSG00000108164 Gm43899 predicted gene, 43899 2.8074 0.0000
10 ENSMUSG00000108544 Cyp2b26-ps cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000025529 Zfp711 zinc finger protein 711 -2.0896 0.0000
50599 ENSMUSG00000086426 Gm15295 predicted gene 15295 -2.0895 0.0000
50598 ENSMUSG00000053441 Adamts19 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19 -2.0890 0.0000
50597 ENSMUSG00000043773 1700048O20Rik RIKEN cDNA 1700048O20 gene -2.0871 0.0000
50596 ENSMUSG00000038507 Parp12 poly (ADP-ribose) polymerase family, member 12 -2.0867 0.0000
50595 ENSMUSG00000020284 Cfap410 cilia and flagella associated protein 410 -2.0861 0.0000
50594 ENSMUSG00000051367 Six1 sine oculis-related homeobox 1 -2.0855 0.0000
50593 ENSMUSG00000026563 Tada1 transcriptional adaptor 1 -2.0854 0.0000
50592 ENSMUSG00000031609 Sap30 sin3 associated polypeptide -2.0854 0.0000
50591 ENSMUSG00000110945 Gm9856 predicted gene 9856 -2.0852 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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