Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849305

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849305


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M1Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227279 novel transcript, antisense to CDH2 5.7814 0.0000
2 ENSG00000201826 RNU6-867P RNA, U6 small nuclear 867, pseudogene 5.6724 0.0000
3 ENSG00000251958 RNU6-1102P RNA, U6 small nuclear 1102, pseudogene 5.6147 0.0000
4 ENSG00000271130 IGHV3OR16-8 immunoglobulin heavy variable 3/OR16-8 (non-functional) 5.3576 0.0000
5 ENSG00000202428 RNU6-108P RNA, U6 small nuclear 108, pseudogene 5.2990 0.0000
6 ENSG00000273951 novel transcript, sense intronic to CHD6 5.2854 0.0000
7 ENSG00000264693 novel transcript 5.1213 0.0000
8 ENSG00000251986 Y RNA 5.1142 0.0000
9 ENSG00000248308 UBX domain protein 2A (UBXN2A) pseudogene 5.0444 0.0000
10 ENSG00000201573 Y RNA 5.0443 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264012 novel transcript, antisense to GATA6 -2.6931 0.0000
63172 ENSG00000234170 LINC02645 long intergenic non-protein coding RNA 2645 -2.6927 0.0000
63171 ENSG00000253412 IGHVIII-13-1 immunoglobulin heavy variable (III)-13-1 (pseudogene) -2.6912 0.0000
63170 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -2.6904 0.0000
63169 ENSG00000046604 DSG2 desmoglein 2 -2.6893 0.0000
63168 ENSG00000274330 ADAM metallopeptidase domain 20 (ADAM20) pseudogene -2.6887 0.0240
63167 ENSG00000243915 THAP12P2 THAP domain containing 12 pseudogene 2 -2.6878 0.0000
63166 ENSG00000229116 novel transcript -2.6845 0.0001
63165 ENSG00000240720 LRRD1 leucine rich repeats and death domain containing 1 -2.6832 0.5477
63164 ENSG00000170899 GSTA4 glutathione S-transferase alpha 4 -2.6830 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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