Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849306

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849306


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M2Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260405 LYR motif containing 2 (LYRM2) pseudogene 5.2854 0.0000
2 ENSG00000260675 TCERG1P2 TCERG1 pseudogene 2 5.2854 0.0000
3 ENSG00000205129 C4orf47 chromosome 4 open reading frame 47 4.7004 0.0000
4 ENSG00000223676 RPL34P26 ribosomal protein L34 pseudogene 26 4.7004 0.0000
5 ENSG00000250711 PRELID3BP7 PRELI domain containing 3B pseudogene 7 4.7004 0.0000
6 ENSG00000280283 TEC 4.6251 0.0000
7 ENSG00000252184 RNU2-10P RNA, U2 small nuclear 10, pseudogene 4.6144 0.0000
8 ENSG00000267070 novel transcript 4.5236 0.0000
9 ENSG00000273623 NA 4.5236 0.0000
10 ENSG00000152433 ZNF547 zinc finger protein 547 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000243810 CFAP61-AS1 CFAP61 antisense RNA 1 -3.1359 0.1125
63172 ENSG00000273403 novel transcript -3.1336 0.2585
63171 ENSG00000272922 novel transcript -3.1336 0.2585
63170 ENSG00000260593 novel transcript, antisense to MARVELD3 -3.1277 0.0033
63169 ENSG00000101074 R3HDML R3H domain containing like -3.1258 0.0492
63168 ENSG00000243655 novel transcript, antisense to MTRNR2L1 -3.1234 0.0000
63167 ENSG00000136160 EDNRB endothelin receptor type B -3.1223 0.0626
63166 ENSG00000224721 novel transcript, antisense to FLVCR2 -3.1221 0.7236
63165 ENSG00000230359 TPI1P2 triosephosphate isomerase 1 pseudogene 2 -3.1201 0.0000
63164 ENSG00000196090 PTPRT protein tyrosine phosphatase receptor type T -3.1164 0.0023

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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