Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849307

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849307


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M3Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000142892 PIGK phosphatidylinositol glycan anchor biosynthesis class K 4.3923 0.0000
2 ENSG00000241891 RPL9P6 ribosomal protein L9 pseudogene 6 4.3219 0.0000
3 ENSG00000252290 NA 4.3219 0.0000
4 ENSG00000283698 VINAC1P vinculin/alpha-catenin family member 1, pseudogene 4.3219 0.0000
5 ENSG00000081248 CACNA1S calcium voltage-gated channel subunit alpha1 S 4.2479 0.0000
6 ENSG00000232337 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (DDX18) pseudogene 4.2479 0.0000
7 ENSG00000234566 RPL7AP71 ribosomal protein L7a pseudogene 71 4.2479 0.0000
8 ENSG00000237870 uncharacterized LOC102724434 4.1699 0.0000
9 ENSG00000250869 tigger transposable element derived 1 (TIGD1) pseudogene 4.1699 0.0000
10 ENSG00000231398 CD164 antigen, sialomucin (CD164) pseudogene 4.1424 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000248727 LINC01948 long intergenic non-protein coding RNA 1948 -2.8496 0.0010
63172 ENSG00000263914 MTND2P13 MT-ND2 pseudogene 13 -2.8494 0.0000
63171 ENSG00000241225 NMTRS-TGA3-1 nuclear-encoded mitochondrial tRNA-Ser (TGA) 3-1 -2.8483 0.0000
63170 ENSG00000273514 FOXD4L6 forkhead box D4 like 6 -2.8474 0.8700
63169 ENSG00000110422 HIPK3 homeodomain interacting protein kinase 3 -2.8468 0.0000
63168 ENSG00000173548 SNX33 sorting nexin 33 -2.8464 0.0000
63167 ENSG00000187714 SLC18A3 solute carrier family 18 member A3 -2.8458 0.1099
63166 ENSG00000225231 LINC02470 long intergenic non-protein coding RNA 2470 -2.8446 0.1748
63165 ENSG00000015592 STMN4 stathmin 4 -2.8446 0.1748
63164 ENSG00000224409 novel transcript -2.8438 0.0479

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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