Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849308

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849308


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M4Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278594 translocase of outer mitochondrial membrane 40 homolog (yeast) (TOMM40) pseudogene 4.6439 0.0000
2 ENSG00000283636 Metazoan signal recognition particle RNA 4.6439 0.0000
3 ENSG00000201713 RNA5SP125 RNA, 5S ribosomal pseudogene 125 4.4594 0.0000
4 ENSG00000229696 KARS1P1 lysyl-tRNA synthetase 1 pseudogene 1 4.4594 0.0000
5 ENSG00000278159 MIR8062 microRNA 8062 4.4594 0.0000
6 ENSG00000228209 PNPP1 PNP pseudogene 1 4.3923 0.0000
7 ENSG00000267871 ZNF460-AS1 ZNF460 antisense RNA 1 4.3923 0.0000
8 ENSG00000260932 novel transcript, antisense to MLYCD - OSGIN1 readthrough 4.3294 0.0000
9 ENSG00000240494 RPS12P28 ribosomal protein S12 pseudogene 28 4.3219 0.0000
10 ENSG00000248635 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264350 SNRPGP2 small nuclear ribonucleoprotein polypeptide G pseudogene 2 -3.0000 1.0000
63172 ENSG00000263604 nitric oxide synthase 2, inducible (NOS2) pseudogene -3.0000 0.2523
63171 ENSG00000261728 novel transcript -3.0000 0.1726
63170 ENSG00000261498 LINC00566 long intergenic non-protein coding RNA 566 -3.0000 0.0707
63169 ENSG00000260978 MKRN3 antisense RNA 1 -3.0000 1.0000
63168 ENSG00000260392 novel transcript -3.0000 1.0000
63167 ENSG00000260188 novel transcript, antisense to SLC22A16 -3.0000 1.0000
63166 ENSG00000258234 novel transcript -3.0000 0.6298
63165 ENSG00000255007 LINC02489 long intergenic non-protein coding RNA 2489 -3.0000 0.0302
63164 ENSG00000254776 PRR23D3P proline rich 23 domain containing 3, pseudogene -3.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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