Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849309

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849309


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M5Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264812 novel transcript, sense intronic C17orf101 4.7549 0.0000
2 ENSG00000216307 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) (NAA40) pseudogene 4.5236 0.0000
3 ENSG00000237716 novel transcript 4.5236 0.0000
4 ENSG00000225956 novel transcript 4.4594 0.0000
5 ENSG00000251523 novel transcript 4.4594 0.0000
6 ENSG00000199855 RNU6-490P RNA, U6 small nuclear 490, pseudogene 4.3923 0.0000
7 ENSG00000230079 STK24P1 serine/threonine kinase 24 pseudogene 1 4.3923 0.0000
8 ENSG00000239742 RN7SL672P RNA, 7SL, cytoplasmic 672, pseudogene 4.3219 0.0000
9 ENSG00000246777 novel transcript 4.3219 0.0000
10 ENSG00000214195 HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000248449 PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene -2.9967 0.0000
63172 ENSG00000230779 ribosomal protein, large, P0 (RPLP0) pseudogene -2.9965 0.0872
63171 ENSG00000233078 novel transcript -2.9959 0.0000
63170 ENSG00000240103 mitochondrially encoded cytochrome c oxidase I (MT-CO1) pseudogene -2.9943 0.0000
63169 ENSG00000223486 novel transcript -2.9935 0.0067
63168 ENSG00000230546 pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3) -2.9932 0.0710
63167 ENSG00000186395 KRT10 keratin 10 -2.9931 0.0000
63166 ENSG00000167920 TMEM99 transmembrane protein 99 (putative) -2.9931 0.0000
63165 ENSG00000226861 novel transcript -2.9914 0.0090
63164 ENSG00000266265 KLF14 Kruppel like factor 14 -2.9908 0.1079

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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