Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849310

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849310


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M6Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226721 EEF1DP2 eukaryotic translation elongation factor 1 delta pseudogene 2 4.5850 0.0000
2 ENSG00000269886 novel transcript, antisense to TTLL3 4.3219 0.0000
3 ENSG00000227407 novel transcript 4.1699 0.0000
4 ENSG00000254252 RPL7P20 ribosomal protein L7 pseudogene 20 4.1699 0.0000
5 ENSG00000254350 novel transcript 4.1699 0.0000
6 ENSG00000258719 novel transcript, antisense to NRXN3 4.1699 0.0000
7 ENSG00000267838 novel transcript 4.1699 0.0000
8 ENSG00000268496 novel transcript, sense intronic to TTYH1 4.1699 0.0000
9 ENSG00000269873 novel transcript 4.1699 0.0000
10 ENSG00000271239 novel transcript 4.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000223734 LAPTM4A-DT LAPTM4A divergent transcript -2.8074 0.3824
63172 ENSG00000223536 novel transcript -2.8074 1.0000
63171 ENSG00000222778 RNA5SP144 RNA, 5S ribosomal pseudogene 144 -2.8074 1.0000
63170 ENSG00000219487 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene -2.8074 1.0000
63169 ENSG00000215859 PDZK1P1 PDZ domain containing 1 pseudogene 1 -2.8074 0.3824
63168 ENSG00000213785 AKR1B1P3 aldo-keto reductase family 1 member B1 pseudogene 3 -2.8074 0.1559
63167 ENSG00000213210 ribosomal protein L32 (RPL32) pseudogene -2.8074 1.0000
63166 ENSG00000212605 RNU1-56P RNA, U1 small nuclear 56, pseudogene -2.8074 1.0000
63165 ENSG00000212404 Y RNA -2.8074 1.0000
63164 ENSG00000206791 RNU1-129P RNA, U1 small nuclear 129, pseudogene -2.8074 0.3824

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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