Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849311

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849311


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M7Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260171 novel transcript 7.8765 0.0000
2 ENSG00000280665 TEC 7.8329 0.0000
3 ENSG00000188691 OR56A5 olfactory receptor family 56 subfamily A member 5 7.7698 0.0000
4 ENSG00000252091 RNU6-1146P RNA, U6 small nuclear 1146, pseudogene 7.4998 0.0000
5 ENSG00000232707 AP1B1P2 AP1B1 pseudogene 2 7.4429 0.0000
6 ENSG00000237439 novel pseudogene 7.4429 0.0000
7 ENSG00000214344 OR4F13P olfactory receptor family 4 subfamily F member 13 pseudogene 7.3399 0.0000
8 ENSG00000215493 kelch-like 12 (Drosophila) (KLH12) pseudogene 7.2668 0.0000
9 ENSG00000250330 GABA(A) receptor-associated protein-like 2 (GABARAPL2 ) pseudogene 7.2288 0.0000
10 ENSG00000202324 RNA5SP366 RNA, 5S ribosomal pseudogene 366 7.1997 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000229528 novel transcript -5.0489 0.0000
63172 ENSG00000179862 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 -5.0489 0.0000
63171 ENSG00000255118 novel transcript -5.0467 0.0000
63170 ENSG00000224653 family with sequence similarity 27 (FAM27) pseudogene -5.0452 0.0001
63169 ENSG00000280725 LINC00251 long intergenic non-protein coding RNA 251 -5.0444 0.0694
63168 ENSG00000278813 Charcot-Leyden crystal galectin (CLC) pseudogene -5.0444 0.0694
63167 ENSG00000274799 Metazoan signal recognition particle RNA -5.0444 0.0694
63166 ENSG00000270916 RPL12P50 ribosomal protein L12 pseudogene 50 -5.0444 0.0694
63165 ENSG00000270509 suppressor of variegation 3-9 homolog 2 (Drosophila) (SUV39H2) pseudogene -5.0444 0.0694
63164 ENSG00000256394 ASIC5 acid sensing ion channel subunit family member 5 -5.0444 0.0694

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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