Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849312

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849312


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M8Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200677 Small nucleolar RNA SNORD18 8.2479 0.0000
2 ENSG00000279259 TEC 7.7177 0.0000
4 ENSG00000279310 TEC 7.6073 0.0000
5 ENSG00000213235 EEF1A1P16 eukaryotic translation elongation factor 1 alpha 1 pseudogene 16 7.5999 0.0000
6 ENSG00000256211 SKP1P2 S-phase kinase associated protein 1 pseudogene 2 7.5999 0.0000
7 ENSG00000213928 IRF9 interferon regulatory factor 9 7.4094 0.0000
9 ENSG00000260914 novel protein 7.2946 0.0000
10 ENSG00000181788 SIAH2 siah E3 ubiquitin protein ligase 2 7.2854 0.0000
63164 ENSG00000156282 CLDN17 claudin 17 -5.3219 0.0726
63165 ENSG00000163364 LINC01116 long intergenic non-protein coding RNA 1116 -5.3219 0.0028

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253138 LINC00967 long intergenic non-protein coding RNA 967 -5.3219 0.0726
63172 ENSG00000249404 novel transcript -5.3219 0.0001
63171 ENSG00000232080 novel transcript -5.3219 0.0028
63170 ENSG00000226230 ubiquitin-fold modifier conjugating enzyme 1 (UFC1) pseudogene -5.3219 0.0726
63169 ENSG00000224577 LINC01117 long intergenic non-protein coding RNA 1117 -5.3219 0.0028
63168 ENSG00000218809 triggering receptor expressed on myeloid cells 1 (TREM1) pseudogene -5.3219 0.0726
63167 ENSG00000198589 LRBA LPS responsive beige-like anchor protein -5.3219 0.0028
63166 ENSG00000181541 MAB21L2 mab-21 like 2 -5.3219 0.0028
63165 ENSG00000163364 LINC01116 long intergenic non-protein coding RNA 1116 -5.3219 0.0028
63164 ENSG00000156282 CLDN17 claudin 17 -5.3219 0.0726

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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