Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849313

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849313


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M9Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233643 LINC02625 long intergenic non-protein coding RNA 2625 5.7279 0.0000
2 ENSG00000228707 novel transcript 5.5236 0.0000
3 ENSG00000269836 novel transcript, antisense MYO9B 5.5236 0.0000
4 ENSG00000276764 Metazoan signal recognition particle RNA 5.4594 0.0000
5 ENSG00000233651 novel transcript 5.3923 0.0000
6 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
7 ENSG00000266977 novel transcript 5.3219 0.0000
8 ENSG00000222035 KIAA2012-AS1 KIAA2012 antisense RNA 1 5.2854 0.0000
9 ENSG00000237926 melanoma antigen pseudogene 5.2854 0.0000
10 ENSG00000275888 novel transcript, antisense to CSNK1D 5.2760 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000100505 TRIM9 tripartite motif containing 9 -3.6339 0.0000
63172 ENSG00000025156 HSF2 heat shock transcription factor 2 -3.6334 0.0090
63171 ENSG00000113318 MSH3 mutS homolog 3 -3.6327 0.0000
63170 ENSG00000196748 CLPSL2 colipase like 2 -3.6320 0.0129
63169 ENSG00000233574 novel transcript -3.6320 0.0000
63168 ENSG00000283848 MIR6872 microRNA 6872 -3.6306 0.0454
63167 ENSG00000249838 SUMO2P7 SUMO2 pseudogene 7 -3.6294 0.0008
63166 ENSG00000241313 WWTR1-AS1 WWTR1 antisense RNA 1 -3.6274 0.0001
63164 ENSG00000266389 novel transcript -3.6259 0.0000
10 ENSG00000275888 novel transcript, antisense to CSNK1D 5.2760 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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