Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849314

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849314


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M10Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274883 Metazoan signal recognition particle RNA 5.9307 0.0000
2 ENSG00000228650 novel transcript 5.6724 0.0000
3 ENSG00000279917 TEC 5.6724 0.0000
4 ENSG00000235357 LINC01621 long intergenic non-protein coding RNA 1621 5.6439 0.0000
5 ENSG00000232774 novel transcript 5.5546 0.0000
6 ENSG00000250548 LINC01303 long intergenic non-protein coding RNA 1303 5.5546 0.0000
7 ENSG00000242266 RN7SL456P RNA, 7SL, cytoplasmic 456, pseudogene 5.4919 0.0000
8 ENSG00000220660 ribosomal protein, large, P1 (RPLP1) pseudogene 5.4594 0.0000
9 ENSG00000252291 NA 5.4594 0.0000
10 ENSG00000206887 RNU6-1008P RNA, U6 small nuclear 1008, pseudogene 5.4263 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000239397 ribosomal protein L13a (RPL13A) pseudogene -3.6187 0.0000
63172 ENSG00000272682 novel transcript -3.6170 0.1393
63171 ENSG00000206203 TSSK2 testis specific serine kinase 2 -3.6170 0.1393
63170 ENSG00000264408 MIR4470 microRNA 4470 -3.6166 0.0092
63169 ENSG00000243064 ABCC13 ATP binding cassette subfamily C member 13 (pseudogene) -3.6144 0.2515
63168 ENSG00000217680 UBE2V1P15 ubiquitin conjugating enzyme E2 V1 pseudogene 15 -3.6144 0.1075
63167 ENSG00000241082 RN7SL259P RNA, 7SL, cytoplasmic 259, pseudogene -3.6133 0.0000
63166 ENSG00000261645 DISC1FP1 DISC1 fusion partner 1 -3.6072 0.0010
63165 ENSG00000112062 MAPK14 mitogen-activated protein kinase 14 -3.6046 0.0017
63164 ENSG00000164379 FOXQ1 forkhead box Q1 -3.6039 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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