Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849315

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849315


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M11Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201885 Y RNA 5.3576 0.0000
2 ENSG00000281721 LINC01080 long intergenic non-protein coding RNA 1080 5.0000 0.0000
3 ENSG00000196704 AMZ2 archaelysin family metallopeptidase 2 4.8074 0.0000
4 ENSG00000249407 IL20RB-AS1 IL20RB antisense RNA 1 4.7549 0.0000
5 ENSG00000280368 tec 4.7004 0.0000
6 ENSG00000280449 tec 4.7004 0.0000
7 ENSG00000277818 Y RNA 4.6733 0.0000
8 ENSG00000255548 novel transcript 4.6439 0.0000
9 ENSG00000255988 TUBB4BP1 TUBB4B pseudogene 1 4.6439 0.0000
10 ENSG00000256079 FAM133GP family with sequence similarity 133 member G, pseudogene 4.6439 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000229266 POM121L8P POM121 transmembrane nucleoporin like 8, pseudogene -3.1699 0.0766
63172 ENSG00000229217 CYCSP11 CYCS pseudogene 11 -3.1699 1.0000
63171 ENSG00000225173 novel transcript -3.1699 0.0006
63170 ENSG00000224664 RPL36AP53 ribosomal protein L36a pseudogene 53 -3.1699 0.0766
63169 ENSG00000223392 CLDN10-AS1 CLDN10 antisense RNA 1 -3.1699 1.0000
63168 ENSG00000223118 RN7SKP102 RN7SK pseudogene 102 -3.1699 1.0000
63167 ENSG00000221930 DENND10P1 DENND10 pseudogene 1 -3.1699 0.2590
63166 ENSG00000221345 Small nucleolar RNA U3 -3.1699 1.0000
63165 ENSG00000211649 IGLV7-46 immunoglobulin lambda variable 7-46 -3.1699 1.0000
63164 ENSG00000207632 MIR588 microRNA 588 -3.1699 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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