Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849316

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849316


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M12Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206697 RNY1P8 RNY1 pseudogene 8 7.2946 0.0000
2 ENSG00000184414 IRS3P insulin receptor substrate 3, pseudogene 7.2854 0.0000
3 ENSG00000227264 ACTR3BP5 ACTR3B pseudogene 5 6.9773 0.0000
4 ENSG00000227521 TUBB4BP8 TUBB4B pseudogene 8 6.9069 0.0000
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 6.8455 0.0000
6 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 6.8202 0.0000
7 ENSG00000228638 FCF1P2 FCF1 pseudogene 2 6.7961 0.0000
8 ENSG00000239439 RFKP2 riboflavin kinase pseudogene 2 6.7347 0.0000
9 ENSG00000235467 RPL10AP5 ribosomal protein L10a pseudogene 5 6.6582 0.0000
10 ENSG00000237672 KRR1P1 KRR1 pseudogene 1 6.6450 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261522 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene -4.6675 0.0013
63171 ENSG00000283706 PRSS50 serine protease 50 -4.6665 0.0000
63170 ENSG00000214184 GCC2-AS1 GCC2 antisense RNA 1 -4.6653 0.0064
63169 ENSG00000109089 CDR2L cerebellar degeneration related protein 2 like -4.6652 0.0000
63168 ENSG00000178695 KCTD12 potassium channel tetramerization domain containing 12 -4.6645 0.0000
63167 ENSG00000207032 Y RNA -4.6620 0.0000
63166 ENSG00000240173 RN7SL771P RNA, 7SL, cytoplasmic 771, pseudogene -4.6619 0.0000
63165 ENSG00000052802 MSMO1 methylsterol monooxygenase 1 -4.6616 0.0000
63164 ENSG00000252371 RNU6-725P RNA, U6 small nuclear 725, pseudogene -4.6599 0.0001
10 ENSG00000237672 KRR1P1 KRR1 pseudogene 1 6.6450 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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