Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849317

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849317


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M13Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000136826 KLF4 Kruppel like factor 4 5.1293 0.0000
2 ENSG00000200257 RNU6-97P RNA, U6 small nuclear 97, pseudogene 5.0875 0.0000
3 ENSG00000213361 ribosomal protein L36 (RPL36) pseudogene 5.0614 0.0000
4 ENSG00000087589 CASS4 Cas scaffold protein family member 4 5.0000 0.0000
5 ENSG00000230546 pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3) 5.0000 0.0000
6 ENSG00000264358 MIR3122 microRNA 3122 5.0000 0.0000
7 ENSG00000253716 MINCR MYC-induced long non-coding RNA 4.9069 0.0000
8 ENSG00000273243 novel transcript 4.9069 0.0000
9 ENSG00000253808 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) 4.8580 0.0000
10 ENSG00000225113 novel transcript 4.8204 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63172 ENSG00000255009 UBTFL1 upstream binding transcription factor like 1 -3.3219 0.6103
63171 ENSG00000254752 OR5M2P olfactory receptor family 5 subfamily M member 2 pseudogene -3.3219 0.6103
63170 ENSG00000253999 IGKV3D-31 immunoglobulin kappa variable 3D-31 (pseudogene) -3.3219 0.6103
63169 ENSG00000253666 novel transcript -3.3219 0.6103
63168 ENSG00000253191 IGKV1D-32 immunoglobulin kappa variable 1D-32 (pseudogene) -3.3219 0.6103
63167 ENSG00000251454 novel transcript -3.3219 0.6103
63166 ENSG00000251244 novel transcript -3.3219 0.6103
63165 ENSG00000251185 novel transcript -3.3219 0.6103
63164 ENSG00000251074 UDP glucuronosyltransferase 2 family pseudogene -3.3219 0.6103
10 ENSG00000225113 novel transcript 4.8204 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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