Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849318

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849318


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M14Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225591 ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene 4.7004 0.0000
2 ENSG00000275024 novel transcript, antisense to VWA2 4.6439 0.0000
3 ENSG00000147885 IFNA16 interferon alpha 16 4.5236 0.0000
4 ENSG00000253389 novel transcript, antisense to ANK1 4.4594 0.0000
5 ENSG00000274705 MIR486-1 microRNA 486-1 4.4594 0.0000
6 ENSG00000283450 MIR486-2 microRNA 486-2 4.4594 0.0000
7 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 4.4259 0.0000
8 ENSG00000235746 CTBP2P2 CTBP2 pseudogene 2 4.3923 0.0000
9 ENSG00000251221 LINC01337 long intergenic non-protein coding RNA 1337 4.3747 0.0000
10 ENSG00000228999 long intergenic non-protein coding RNA 1830 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275130 cytochrome c oxidase subunit VIIIC (COX8C) pseudogene -2.8074 1.0000
63172 ENSG00000274560 novel transcript -2.8074 1.0000
63171 ENSG00000274265 novel transcript -2.8074 0.6165
63170 ENSG00000274198 novel transcript -2.8074 0.3931
63169 ENSG00000274015 novel transcript -2.8074 0.1131
63168 ENSG00000273698 MRPL57P1 mitochondrial ribosomal protein L57 pseudogene 1 -2.8074 1.0000
63167 ENSG00000272025 Small nucleolar RNA SNORA74 -2.8074 1.0000
63166 ENSG00000271496 SNRPGP20 small nuclear ribonucleoprotein polypeptide G pseudogene 20 -2.8074 0.6165
63165 ENSG00000271488 RBM11P1 RNA binding motif protein 11 pseudogene 1 -2.8074 0.6165
63164 ENSG00000271455 HIG1 hypoxia inducible domain family, member 1A (HIGD1A) pseudogene -2.8074 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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