Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849319

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849319


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M15Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243338 RN7SL307P RNA, 7SL, cytoplasmic 307, pseudogene 6.0000 0.0000
2 ENSG00000235123 DSCAM-AS1 DSCAM antisense RNA 1 5.9307 0.0000
3 ENSG00000277687 novel transcript, sense intronic to CACUL1 5.7814 0.0000
4 ENSG00000250020 Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene 5.6293 0.0000
5 ENSG00000168288 MMADHC metabolism of cobalamin associated D 5.6147 0.0000
6 ENSG00000212257 RNU6-1176P RNA, U6 small nuclear 1176, pseudogene 5.6147 0.0000
7 ENSG00000231969 MMADHC-DT MMADHC divergent transcript 5.6147 0.0000
8 ENSG00000237011 novel transcript 5.6147 0.0000
9 ENSG00000249019 ribosomal protein S7 (RPS7) pseudogene 5.5850 0.0000
10 ENSG00000222436 RN7SKP278 RN7SK pseudogene 278 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000257998 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa (TAF9) pseudogene -3.1699 0.6117
63172 ENSG00000257356 BNIP3P6 BCL2 interacting protein 3 pseudogene 6 -3.1699 0.0107
63171 ENSG00000257035 Transmembrane protein 132B (TMEM132B) pseudogene -3.1699 0.6117
63170 ENSG00000255815 KRT8P11 keratin 8 pseudogene 11 -3.1699 0.6117
63169 ENSG00000255166 Ankyrin repeat domain-containing protein (ANKRD) pseudogene -3.1699 0.0013
63168 ENSG00000254314 novel transcript -3.1699 0.6117
63167 ENSG00000253957 IGHV3-22 immunoglobulin heavy variable 3-22 (pseudogene) -3.1699 0.0397
63166 ENSG00000253884 chromosome 9 open reading frame 122 (C9orf122) pseudogene -3.1699 0.0013
63164 ENSG00000253077 RNA5SP169 RNA, 5S ribosomal pseudogene 169 -3.1699 0.0265
10 ENSG00000222436 RN7SKP278 RN7SK pseudogene 278 5.5546 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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