Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849320

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849320


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M16Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229415 SFTA3 surfactant associated 3 7.2384 0.0000
2 ENSG00000102189 EEA1 early endosome antigen 1 7.2095 0.0000
3 ENSG00000221944 TIGD1 tigger transposable element derived 1 7.1799 0.0000
4 ENSG00000284407 MIR5001 microRNA 5001 7.1799 0.0000
5 ENSG00000259152 novel transcript, intronic to GABRG3 7.1085 0.0000
6 ENSG00000214374 RPLP2P1 ribosomal protein lateral stalk subunit P2 pseudogene 1 7.0875 0.0000
7 ENSG00000235811 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e (ATP6V0E) pseudogene 7.0768 0.0000
8 ENSG00000238444 RNU6-893P RNA, U6 small nuclear 893, pseudogene 7.0553 0.0000
9 ENSG00000271025 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2, pseudogene 7.0553 0.0000
10 ENSG00000197045 GMFB glia maturation factor beta 7.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000142875 PRKACB protein kinase cAMP-activated catalytic subunit beta -5.3219 0.1109
63172 ENSG00000088325 TPX2 TPX2 microtubule nucleation factor -5.3219 0.1109
63171 ENSG00000019169 MARCO macrophage receptor with collagenous structure -5.3219 0.1109
63170 ENSG00000278159 MIR8062 microRNA 8062 -5.3201 0.0074
63169 ENSG00000260057 LINC01571 long intergenic non-protein coding RNA 1571 -5.3189 0.0000
63168 ENSG00000204657 OR2H2 olfactory receptor family 2 subfamily H member 2 -5.3174 0.0004
63167 ENSG00000100441 KHNYN KH and NYN domain containing -5.3157 0.0000
63166 ENSG00000169379 ARL13B ADP ribosylation factor like GTPase 13B -5.3156 0.0000
63165 ENSG00000122873 CISD1 CDGSH iron sulfur domain 1 -5.3140 0.0000
63164 ENSG00000089902 RCOR1 REST corepressor 1 -5.3114 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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