Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849321

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849321


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M17Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183161 FANCF FA complementation group F 5.2479 0.0000
2 ENSG00000228446 ANKRD49P1 ANKRD49 pseudogene 1 5.2479 0.0000
3 ENSG00000220804 LINC01881 long intergenic non-protein coding RNA 1881 5.1699 0.0000
4 ENSG00000224160 CICP10 capicua transcriptional repressor pseudogene 10 5.1699 0.0000
5 ENSG00000244528 SEPTIN14P2 septin 14 pseudogene 2 5.1699 0.0000
6 ENSG00000234515 PPP1R2P1 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1 5.1333 0.0000
7 ENSG00000163961 RNF168 ring finger protein 168 5.0330 0.0000
8 ENSG00000251350 LINC02475 long intergenic non-protein coding RNA 2475 5.0000 0.0000
9 ENSG00000229679 novel transcript 4.9843 0.0000
10 ENSG00000116014 KISS1R KISS1 receptor 4.9069 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230806 SRGAP2-AS1 SRGAP2 antisense RNA 1 -3.5693 0.0157
63172 ENSG00000257398 novel transcript -3.5672 0.0756
63171 ENSG00000224373 IGHV4-59 immunoglobulin heavy variable 4-59 -3.5670 0.0223
63170 ENSG00000211968 IGHV1-58 immunoglobulin heavy variable 1-58 -3.5670 0.0223
63169 ENSG00000095370 SH2D3C SH2 domain containing 3C -3.5646 0.0067
63168 ENSG00000129292 PHF20L1 PHD finger protein 20 like 1 -3.5609 0.0000
63167 ENSG00000277591 RN7SL575P RNA, 7SL, cytoplasmic 575, pseudogene -3.5599 0.0749
63166 ENSG00000231890 DARS-AS1 DARS antisense RNA 1 -3.5545 0.0001
63165 ENSG00000269535 novel transcript, antisense to ZNF480 and ZNF610 -3.5536 0.1743
63164 ENSG00000115325 DOK1 docking protein 1 -3.5507 0.0020

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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