Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849323

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849323


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M19Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260398 novel transcript, overlapping to PKIA 5.2089 0.0000
2 ENSG00000228509 novel transcript, antisense to NAB1 5.1699 0.0000
3 ENSG00000258479 LINC00640 long intergenic non-protein coding RNA 640 5.1496 0.0000
4 ENSG00000199415 RNA5SP370 RNA, 5S ribosomal pseudogene 370 5.1293 0.0000
5 ENSG00000248968 novel transcript 4.9542 0.0000
6 ENSG00000213671 OLA1P2 OLA1 pseudogene 2 4.9069 0.0000
7 ENSG00000232713 RPS12P3 ribosomal protein S12 pseudogene 3 4.9069 0.0000
8 ENSG00000259149 novel transcript 4.8074 0.0000
9 ENSG00000267098 novel transcript 4.8074 0.0000
10 ENSG00000226427 HMGN2P7 high mobility group nucleosomal binding domain 2 pseudogene 7 4.7680 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000167037 SGSM1 small G protein signaling modulator 1 -3.2857 0.1145
63172 ENSG00000261840 uncharacterized LOC730183 -3.2839 0.4145
63171 ENSG00000233542 novel transcript -3.2839 0.4145
63170 ENSG00000222287 RNU6-1043P RNA, U6 small nuclear 1043, pseudogene -3.2839 0.4145
63169 ENSG00000277463 novel transcript -3.2824 0.0103
63168 ENSG00000181322 NME9 NME/NM23 family member 9 -3.2794 0.0827
63167 ENSG00000168995 SIGLEC7 sialic acid binding Ig like lectin 7 -3.2753 0.2627
63166 ENSG00000096654 ZNF184 zinc finger protein 184 -3.2713 0.1811
63165 ENSG00000272933 novel transcript -3.2698 0.0004
63164 ENSG00000230913 NPM1P51 nucleophosmin 1 pseudogene 51 -3.2680 0.1729

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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