Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900052-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M1Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000085423 4930594M22Rik RIKEN cDNA 4930594M22 gene 6.4094 0.0000
2 ENSMUSG00000027713 1810062G17Rik RIKEN cDNA 1810062G17 gene 6.2416 0.0000
3 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2288 0.0000
4 ENSMUSG00000033623 Pcgf3 polycomb group ring finger 3 6.1898 0.0000
5 ENSMUSG00000105906 Iglc1 immunoglobulin lambda constant 1 6.0875 0.0000
6 ENSMUSG00000106668 Iglj1 immunoglobulin lambda joining 1 6.0875 0.0000
7 ENSMUSG00000111313 Gm18942 predicted gene, 18942 5.8955 0.0000
8 ENSMUSG00000107697 Gm44399 predicted gene, 44399 5.8826 0.0000
9 ENSMUSG00000108016 Gm8039 predicted gene 8039 5.8826 0.0000
10 ENSMUSG00000043008 Klhl6 kelch-like 6 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000035984 Nme5 NME/NM23 family member 5 -4.9765 0.0000
50599 ENSMUSG00000047773 Ankfn1 ankyrin-repeat and fibronectin type III domain containing 1 -4.9764 0.0000
50598 ENSMUSG00000015880 Ncapg non-SMC condensin I complex, subunit G -4.9754 0.0000
50597 ENSMUSG00000092705 Gm24513 predicted gene, 24513 -4.9736 0.0000
50596 ENSMUSG00000087561 Gm11608 predicted gene 11608 -4.9736 0.0000
50595 ENSMUSG00000027520 Zdbf2 zinc finger, DBF-type containing 2 -4.9736 0.0000
50594 ENSMUSG00000108152 Gm44152 predicted gene, 44152 -4.9727 0.0000
50593 ENSMUSG00000057181 5730455P16Rik RIKEN cDNA 5730455P16 gene -4.9696 0.0000
50592 ENSMUSG00000026374 Tsn translin -4.9693 0.0000
50591 ENSMUSG00000103356 Gm37595 predicted gene, 37595 -4.9690 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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