Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900052-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M2Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000107697 Gm44399 predicted gene, 44399 6.3399 0.0000
2 ENSMUSG00000110116 4933430A20Rik RIKEN cDNA 4933430A20 gene 6.2479 0.0000
3 ENSMUSG00000110321 Gm39164 predicted gene, 39164 6.2479 0.0000
4 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2095 0.0000
5 ENSMUSG00000097694 G730013B05Rik RIKEN cDNA G730013B05 gene 6.0618 0.0000
6 ENSMUSG00000111180 Gm39348 predicted gene, 39348 5.9962 0.0000
7 ENSMUSG00000076749 Trgc1 T cell receptor gamma, constant 1 5.9384 0.0000
9 ENSMUSG00000021256 Vash1 vasohibin 1 5.8329 0.0000
10 ENSMUSG00000100843 Gm8307 predicted gene 8307 5.8329 0.0000
50591 ENSMUSG00000110277 Gm45871 predicted gene 45871 -5.0126 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000021391 Cenpp centromere protein P -5.0193 0.0000
50598 ENSMUSG00000025862 Stag2 stromal antigen 2 -5.0180 0.0000
50597 ENSMUSG00000020224 Llph LLP homolog, long-term synaptic facilitation (Aplysia) -5.0164 0.0000
50596 ENSMUSG00000023931 Efhb EF hand domain family, member B -5.0160 0.0000
50595 ENSMUSG00000110424 1700012D14Rik RIKEN cDNA 1700012D14 gene -5.0154 0.0000
50594 ENSMUSG00000027079 Clp1 CLP1, cleavage and polyadenylation factor I subunit -5.0141 0.0000
50593 ENSMUSG00000053333 Dis3l2 DIS3 like 3'-5' exoribonuclease 2 -5.0140 0.0000
50592 ENSMUSG00000076246 Gm22256 predicted gene, 22256 -5.0128 0.0000
50591 ENSMUSG00000110277 Gm45871 predicted gene 45871 -5.0126 0.0000
10 ENSMUSG00000100843 Gm8307 predicted gene 8307 5.8329 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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