Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900054-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M3Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021798 Ldb3 LIM domain binding 3 6.0444 0.0000
2 ENSMUSG00000104920 Gm43215 predicted gene 43215 5.8329 0.0000
3 ENSMUSG00000038750 Omt2b oocyte maturation, beta 5.7279 0.0000
4 ENSMUSG00000090802 Gm8074 predicted gene 8074 5.7279 0.0000
5 ENSMUSG00000107464 Gm44150 predicted gene, 44150 5.7279 0.0000
6 ENSMUSG00000034785 Dio1 deiodinase, iodothyronine, type I 5.6724 0.0000
7 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.6430 0.0000
8 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.5574 0.0000
9 ENSMUSG00000046840 Hnf4aos hepatic nuclear factor 4 alpha, opposite strand 5.5236 0.0000
50591 ENSMUSG00000105831 Gm43184 predicted gene 43184 -4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000020123 Avpr1a arginine vasopressin receptor 1A -4.7113 0.0000
50599 ENSMUSG00000038535 Zfp280d zinc finger protein 280D -4.7073 0.0000
50598 ENSMUSG00000064210 Ano6 anoctamin 6 -4.7070 0.0000
50597 ENSMUSG00000083695 Rnf138rt1 ring finger protein 138, retrogene 1 -4.7066 0.0000
50596 ENSMUSG00000070332 Trim80 tripartite motif-containing 80 -4.7021 0.0000
50595 ENSMUSG00000039145 Camk1d calcium/calmodulin-dependent protein kinase ID -4.7012 0.0000
50594 ENSMUSG00000112746 Gm19309 predicted gene, 19309 -4.7004 0.0000
50593 ENSMUSG00000111323 Gm48129 predicted gene, 48129 -4.7004 0.0000
50592 ENSMUSG00000111271 Gm48127 predicted gene, 48127 -4.7004 0.0000
50591 ENSMUSG00000105831 Gm43184 predicted gene 43184 -4.7004 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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