Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900054-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M4Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104920 Gm43215 predicted gene 43215 6.0768 0.0000
2 ENSMUSG00000038750 Omt2b oocyte maturation, beta 6.0224 0.0000
3 ENSMUSG00000090802 Gm8074 predicted gene 8074 6.0224 0.0000
4 ENSMUSG00000018126 Baiap2l2 BAI1-associated protein 2-like 2 5.9542 0.0000
5 ENSMUSG00000021798 Ldb3 LIM domain binding 3 5.6724 0.0000
6 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.6242 0.0000
7 ENSMUSG00000034768 Asb16 ankyrin repeat and SOCS box-containing 16 5.5691 0.0000
8 ENSMUSG00000090224 Gm15974 predicted gene 15974 5.5236 0.0000
9 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.5156 0.0000
10 ENSMUSG00000053896 4933409G03Rik RIKEN cDNA 4933409G03 gene 5.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000032313 Tmem266 transmembrane protein 266 -4.7004 0.0089
50599 ENSMUSG00000028716 Pdzk1ip1 PDZK1 interacting protein 1 -4.7004 0.0089
50598 ENSMUSG00000026705 Klhl20 kelch-like 20 -4.7004 0.0000
50597 ENSMUSG00000026037 Orc2 origin recognition complex, subunit 2 -4.7004 0.0000
50596 ENSMUSG00000025609 Mkln1 muskelin 1, intracellular mediator containing kelch motifs -4.7004 0.0089
50595 ENSMUSG00000025257 Ribc1 RIB43A domain with coiled-coils 1 -4.7004 0.0000
50594 ENSMUSG00000024843 Chka choline kinase alpha -4.7004 0.0000
50593 ENSMUSG00000024603 Dctn4 dynactin 4 -4.7004 0.0089
50592 ENSMUSG00000021311 Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase -4.7004 0.0000
50591 ENSMUSG00000020132 Rab21 RAB21, member RAS oncogene family -4.7004 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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