Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900056-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M5Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.5546 0.0000
2 ENSMUSG00000080749 Gm12134 predicted gene 12134 5.0875 0.0000
3 ENSMUSG00000098879 Mir7675 microRNA 7675 5.0875 0.0000
4 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.0403 0.0000
5 ENSMUSG00000107490 Gm44058 predicted gene, 44058 5.0000 0.0000
6 ENSMUSG00000110589 Gm45754 predicted gene 45754 4.9537 0.0000
7 ENSMUSG00000106479 Mir721 microRNA 721 4.9069 0.0000
8 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 4.8824 0.0000
9 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.8580 0.0000
10 ENSMUSG00000062638 Btnl1 butyrophilin-like 1 4.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000095989 Gm23049 predicted gene, 23049 -3.8516 0.0000
50599 ENSMUSG00000024868 Dkk1 dickkopf WNT signaling pathway inhibitor 1 -3.8507 0.0000
50598 ENSMUSG00000032346 Ooep oocyte expressed protein -3.8502 0.0267
50597 ENSMUSG00000021804 Rgr retinal G protein coupled receptor -3.8502 0.0267
50596 ENSMUSG00000107798 Gm44064 predicted gene, 44064 -3.8495 0.0000
50595 ENSMUSG00000095193 Gm20939 predicted gene, 20939 -3.8481 0.0000
50594 ENSMUSG00000065658 Gm23102 predicted gene, 23102 -3.8481 0.0000
50593 ENSMUSG00000082507 Gm9378 predicted gene 9378 -3.8470 0.0000
50591 ENSMUSG00000089363 Gm23821 predicted gene, 23821 -3.8435 0.0000
10 ENSMUSG00000062638 Btnl1 butyrophilin-like 1 4.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...