Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900056-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M6Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.2479 0.0000
2 ENSMUSG00000106138 Gm44392 predicted gene, 44392 5.2095 0.0000
3 ENSMUSG00000110589 Gm45754 predicted gene 45754 5.2095 0.0000
4 ENSMUSG00000098879 Mir7675 microRNA 7675 5.1699 0.0000
5 ENSMUSG00000100969 1700030N03Rik RIKEN cDNA 1700030N03 gene 5.1293 0.0000
6 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.1159 0.0000
7 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 5.1011 0.0000
8 ENSMUSG00000060149 BC002059 cDNA sequence BC002059 5.0444 0.0000
9 ENSMUSG00000022425 Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 4.9542 0.0000
10 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.9542 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000039601 Rcan2 regulator of calcineurin 2 -3.8533 0.0000
50599 ENSMUSG00000032381 Ciao2a cytosolic iron-sulfur assembly component 2A -3.8515 0.0000
50598 ENSMUSG00000087059 Gm12339 predicted gene 12339 -3.8502 0.0003
50597 ENSMUSG00000112160 BC024063 cDNA sequence BC024063 -3.8502 0.0000
50596 ENSMUSG00000088787 Gm25371 predicted gene, 25371 -3.8500 0.0000
50595 ENSMUSG00000084069 Gm12306 predicted gene 12306 -3.8500 0.0000
50594 ENSMUSG00000106834 Gm10459 predicted gene 10459 -3.8494 0.0000
50593 ENSMUSG00000107644 Gm6342 predicted gene 6342 -3.8492 0.0000
50592 ENSMUSG00000052726 Kcnt2 potassium channel, subfamily T, member 2 -3.8488 0.0000
50591 ENSMUSG00000097562 Gm26639 predicted gene, 26639 -3.8484 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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