Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900058-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M7Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000037752 Xkr8 X-linked Kx blood group related 8 6.0661 0.0000
2 ENSMUSG00000101746 2310043L19Rik RIKEN cDNA 2310043L19 gene 5.9773 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 5.9069 0.0000
4 ENSMUSG00000110502 Gm8804 predicted gene 8804 5.8609 0.0000
5 ENSMUSG00000091908 Gm17231 predicted gene 17231 5.8580 0.0000
6 ENSMUSG00000111749 Gm47927 predicted gene, 47927 5.8329 0.0000
7 ENSMUSG00000080242 Atp6v0c-ps2 ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 5.7288 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.7004 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.7004 0.0000
10 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000039168 Dap death-associated protein -4.7625 0.0000
50599 ENSMUSG00000049477 Gm8508 predicted gene 8508 -4.7623 0.0000
50598 ENSMUSG00000022871 Fetub fetuin beta -4.7605 0.0000
50597 ENSMUSG00000031584 Gsr glutathione reductase -4.7597 0.0000
50596 ENSMUSG00000098771 Mir6538 microRNA 6538 -4.7595 0.0000
50595 ENSMUSG00000111807 4933433G08Rik RIKEN cDNA 4933433G08 gene -4.7587 0.0000
50594 ENSMUSG00000038047 Haus6 HAUS augmin-like complex, subunit 6 -4.7585 0.0000
50593 ENSMUSG00000044471 Lncpint long non-protein coding RNA, Trp53 induced transcript -4.7574 0.0000
50592 ENSMUSG00000110774 Gm39318 predicted gene, 39318 -4.7549 0.0002
50591 ENSMUSG00000109608 Gm45597 predicted gene 45597 -4.7549 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...