Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900058-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M8Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105558 Gm5855 predicted gene 5855 6.2668 0.0000
2 ENSMUSG00000106095 2010110G14Rik RIKEN cDNA 2010110G14 gene 6.2668 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 6.1293 0.0000
4 ENSMUSG00000080242 Atp6v0c-ps2 ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 6.1189 0.0000
5 ENSMUSG00000112364 4930503E24Rik RIKEN cDNA 4930503E24 gene 5.9069 0.0000
6 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7279 0.0000
7 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 5.6724 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.6439 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.6439 0.0000
10 ENSMUSG00000109890 AU023762 expressed sequence AU023762 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000025738 Fbxl16 F-box and leucine-rich repeat protein 16 -4.8066 0.0000
50599 ENSMUSG00000022871 Fetub fetuin beta -4.8056 0.0000
50597 ENSMUSG00000096425 Gm24979 predicted gene, 24979 -4.8044 0.0000
50596 ENSMUSG00000040302 Rbm48 RNA binding motif protein 48 -4.8027 0.0000
50595 ENSMUSG00000040592 Cd79b CD79B antigen -4.7994 0.0000
50594 ENSMUSG00000061559 Wdr61 WD repeat domain 61 -4.7986 0.0000
50593 ENSMUSG00000042817 Flt3 FMS-like tyrosine kinase 3 -4.7986 0.0000
50592 ENSMUSG00000097363 Gm26717 predicted gene, 26717 -4.7978 0.0000
50591 ENSMUSG00000085818 Gm13267 predicted gene 13267 -4.7978 0.0000
10 ENSMUSG00000109890 AU023762 expressed sequence AU023762 5.5546 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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