Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900060-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M9Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 7.0875 0.0000
2 ENSMUSG00000098187 Gm8927 predicted gene 8927 6.9069 0.0000
3 ENSMUSG00000076064 Mir690 microRNA 690 6.7841 0.0000
4 ENSMUSG00000080561 Gm26042 predicted gene, 26042 6.7324 0.0000
5 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.6072 0.0000
6 ENSMUSG00000029191 Rfc1 replication factor C (activator 1) 1 6.5999 0.0000
7 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5850 0.0000
8 ENSMUSG00000107785 Gm45083 predicted gene 45083 6.5236 0.0000
9 ENSMUSG00000032295 Man2c1 mannosidase, alpha, class 2C, member 1 6.4971 0.0000
10 ENSMUSG00000111850 Gm47829 predicted gene, 47829 6.4971 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000039737 Prkrip1 Prkr interacting protein 1 (IL11 inducible) -5.4657 0.0000
50599 ENSMUSG00000010911 Apip APAF1 interacting protein -5.4648 0.0000
50598 ENSMUSG00000030380 Mzf1 myeloid zinc finger 1 -5.4636 0.0000
50597 ENSMUSG00000052911 Lamb2 laminin, beta 2 -5.4618 0.0000
50596 ENSMUSG00000034218 Atm ataxia telangiectasia mutated -5.4610 0.0000
50595 ENSMUSG00000042417 Ccno cyclin O -5.4606 0.0000
50594 ENSMUSG00000046351 Zfp322a zinc finger protein 322A -5.4606 0.0000
50593 ENSMUSG00000025025 Mxi1 MAX interactor 1, dimerization protein -5.4604 0.0000
50592 ENSMUSG00000108019 Gm44108 predicted gene, 44108 -5.4594 0.0000
50591 ENSMUSG00000103659 Gm32569 predicted gene, 32569 -5.4594 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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