Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900060-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M10Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 6.9887 0.0000
2 ENSMUSG00000072647 Adam1a a disintegrin and metallopeptidase domain 1a 6.8074 0.0000
3 ENSMUSG00000079029 Gm5662 predicted gene 5662 6.7615 0.0000
4 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.7481 0.0000
5 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5546 0.0000
6 ENSMUSG00000076064 Mir690 microRNA 690 6.5356 0.0000
7 ENSMUSG00000103043 Gm37306 predicted gene, 37306 6.5183 0.0000
8 ENSMUSG00000031848 Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated 6.5165 0.0000
9 ENSMUSG00000107161 Gm43850 predicted gene 43850 6.4919 0.0000
10 ENSMUSG00000109888 Gm45600 predicted gene 45600 6.4434 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000038917 3930402G23Rik RIKEN cDNA 3930402G23 gene -5.4810 0.0000
50599 ENSMUSG00000105736 Gm42456 predicted gene 42456 -5.4809 0.0000
50598 ENSMUSG00000065501 Mir335 microRNA 335 -5.4809 0.0000
50597 ENSMUSG00000033419 Snap91 synaptosomal-associated protein 91 -5.4804 0.0000
50596 ENSMUSG00000020364 Zfp354a zinc finger protein 354A -5.4798 0.0000
50595 ENSMUSG00000027274 Mkks McKusick-Kaufman syndrome -5.4777 0.0000
50594 ENSMUSG00000089139 Mir1964 microRNA 1964 -5.4768 0.0000
50592 ENSMUSG00000108777 Gm45081 predicted gene 45081 -5.4739 0.0000
50591 ENSMUSG00000028034 Fubp1 far upstream element (FUSE) binding protein 1 -5.4709 0.0000
10 ENSMUSG00000109888 Gm45600 predicted gene 45600 6.4434 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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