Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900062-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M11Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.9069 0.0000
2 ENSMUSG00000108895 Gm45070 predicted gene 45070 6.8138 0.0000
3 ENSMUSG00000035818 Plekhs1 pleckstrin homology domain containing, family S member 1 6.7415 0.0000
4 ENSMUSG00000020547 Bzw2 basic leucine zipper and W2 domains 2 6.6724 0.0000
5 ENSMUSG00000036188 Ankmy2 ankyrin repeat and MYND domain containing 2 6.6724 0.0000
6 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 6.5546 0.0000
7 ENSMUSG00000044957 Pp2d1 protein phosphatase 2C-like domain containing 1 6.4919 0.0000
8 ENSMUSG00000111960 Gm46349 predicted gene, 46349 6.4260 0.0000
9 ENSMUSG00000084361 Gm8202 predicted gene 8202 6.3576 0.0000
10 ENSMUSG00000102689 Gm37217 predicted gene, 37217 6.3531 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000031388 Naa10 N(alpha)-acetyltransferase 10, NatA catalytic subunit -5.5566 0.0000
50599 ENSMUSG00000031387 Renbp renin binding protein -5.5566 0.0000
50598 ENSMUSG00000050777 Tmem37 transmembrane protein 37 -5.5559 0.0000
50597 ENSMUSG00000016206 H2-M3 histocompatibility 2, M region locus 3 -5.5552 0.0000
50596 ENSMUSG00000112645 Gm48787 predicted gene, 48787 -5.5546 0.0003
50595 ENSMUSG00000111064 Gm30285 predicted gene, 30285 -5.5546 0.0000
50594 ENSMUSG00000110269 Gm45258 predicted gene 45258 -5.5546 0.0000
50593 ENSMUSG00000109321 A330076H08Rik RIKEN cDNA A330076H08 gene -5.5546 0.0000
50592 ENSMUSG00000108070 Gm43872 predicted gene, 43872 -5.5546 0.0003
50591 ENSMUSG00000105101 Gm43206 predicted gene 43206 -5.5546 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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