Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900062-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M12Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 6.7944 0.0000
2 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.6724 0.0000
3 ENSMUSG00000109754 Gm39214 predicted gene, 39214 6.6439 0.0000
4 ENSMUSG00000031933 Izumo1r IZUMO1 receptor, JUNO 6.5392 0.0000
5 ENSMUSG00000041477 Dcp1b decapping mRNA 1B 6.5236 0.0000
6 ENSMUSG00000108739 Gm45096 predicted gene 45096 6.5157 0.0000
7 ENSMUSG00000082255 Gm11822 predicted gene 11822 6.3399 0.0000
8 ENSMUSG00000085401 Slc39a1-ps solute carrier family 39 (zinc transporter), member 1, pseudogene 6.3219 0.0000
9 ENSMUSG00000103353 Gm37597 predicted gene, 37597 6.3219 0.0000
10 ENSMUSG00000107307 Gm42935 predicted gene 42935 6.2988 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000021514 Zfp369 zinc finger protein 369 -5.5850 0.0000
50599 ENSMUSG00000020412 Ascc2 activating signal cointegrator 1 complex subunit 2 -5.5850 0.0000
50598 ENSMUSG00000104346 Pcdhga3 protocadherin gamma subfamily A, 3 -5.5842 0.0000
50597 ENSMUSG00000097262 4933416M07Rik RIKEN cDNA 4933416M07 gene -5.5837 0.0000
50596 ENSMUSG00000044763 Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit -5.5837 0.0000
50595 ENSMUSG00000031592 Pcm1 pericentriolar material 1 -5.5824 0.0000
50594 ENSMUSG00000104519 Gm37161 predicted gene, 37161 -5.5811 0.0000
50593 ENSMUSG00000080575 Mir1190 microRNA 1190 -5.5799 0.0000
50592 ENSMUSG00000102413 Gm36937 predicted gene, 36937 -5.5792 0.0000
50591 ENSMUSG00000038026 Kcnj9 potassium inwardly-rectifying channel, subfamily J, member 9 -5.5792 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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