Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900063-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M14Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111587 Gm32338 predicted gene, 32338 7.1396 0.0000
2 ENSMUSG00000080524 Gm23879 predicted gene, 23879 6.8662 0.0000
4 ENSMUSG00000094497 Gm8210 predicted pseudogene 8210 6.8418 0.0000
5 ENSMUSG00000026288 Inpp5d inositol polyphosphate-5-phosphatase D 6.7944 0.0000
6 ENSMUSG00000046108 Il17c interleukin 17C 6.7814 0.0000
7 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
8 ENSMUSG00000089105 Gm23115 predicted gene, 23115 6.7549 0.0000
9 ENSMUSG00000109079 Gm44755 predicted gene 44755 6.7515 0.0000
10 ENSMUSG00000088966 Gm22088 predicted gene, 22088 6.7279 0.0000
50591 ENSMUSG00000020411 Nipal4 NIPA-like domain containing 4 -5.8484 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000071489 Ptgdr prostaglandin D receptor -5.8571 0.0000
50599 ENSMUSG00000042606 Hirip3 HIRA interacting protein 3 -5.8570 0.0000
50598 ENSMUSG00000027770 Dhx36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 -5.8562 0.0000
50597 ENSMUSG00000002985 Apoe apolipoprotein E -5.8555 0.0000
50596 ENSMUSG00000081578 Gm12611 predicted gene 12611 -5.8555 0.0000
50595 ENSMUSG00000097997 Gm27017 predicted gene, 27017 -5.8546 0.0000
50594 ENSMUSG00000021096 Ppm1a protein phosphatase 1A, magnesium dependent, alpha isoform -5.8520 0.0000
50593 ENSMUSG00000015222 Map2 microtubule-associated protein 2 -5.8515 0.0000
50592 ENSMUSG00000027599 Armc1 armadillo repeat containing 1 -5.8495 0.0000
50591 ENSMUSG00000020411 Nipal4 NIPA-like domain containing 4 -5.8484 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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