Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026493

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026493


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M1Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091481 Gm17154 predicted gene 17154 7.6900 0.0000
2 ENSMUSG00000032750 Gab3 growth factor receptor bound protein 2-associated protein 3 7.6653 0.0000
3 ENSMUSG00000065798 Gm25518 predicted gene, 25518 7.6294 0.0000
4 ENSMUSG00000034552 Zswim2 zinc finger SWIM-type containing 2 7.6293 0.0000
5 ENSMUSG00000040537 Adam22 a disintegrin and metallopeptidase domain 22 7.2614 0.0000
6 ENSMUSG00000055069 Rab39 RAB39, member RAS oncogene family 7.2336 0.0000
7 ENSMUSG00000038279 Nop2 NOP2 nucleolar protein 7.1997 0.0000
8 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.1599 0.0000
9 ENSMUSG00000088885 Gm24217 predicted gene, 24217 7.1446 0.0000
10 ENSMUSG00000073980 Gm9574 predicted gene 9574 7.1137 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000077406 Gm25421 predicted gene, 25421 -5.5998 0.0005
50599 ENSMUSG00000031202 Rab39b RAB39B, member RAS oncogene family -5.5998 0.0005
50598 ENSMUSG00000065609 Mir7-2 microRNA 7-2 -5.5947 0.0000
50597 ENSMUSG00000109697 Gm34030 predicted gene, 34030 -5.5944 0.0000
50596 ENSMUSG00000028601 Echdc2 enoyl Coenzyme A hydratase domain containing 2 -5.5934 0.0000
50595 ENSMUSG00000037583 Nr0b2 nuclear receptor subfamily 0, group B, member 2 -5.5919 0.0000
50594 ENSMUSG00000072623 Zfp9 zinc finger protein 9 -5.5910 0.0000
50593 ENSMUSG00000027937 Jtb jumping translocation breakpoint -5.5875 0.0000
50592 ENSMUSG00000110442 Gm45804 predicted gene 45804 -5.5850 0.0000
50591 ENSMUSG00000101037 Gm28424 predicted gene 28424 -5.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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