Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026495

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026495


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M3Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109193 Gm39027 predicted gene, 39027 6.7072 0.0000
2 ENSMUSG00000084757 1700057H15Rik RIKEN cDNA 1700057H15 gene 6.6294 0.0000
3 ENSMUSG00000089105 Gm23115 predicted gene, 23115 6.6147 0.0000
4 ENSMUSG00000085284 Gm16189 predicted gene 16189 6.5236 0.0000
5 ENSMUSG00000036185 Sapcd1 suppressor APC domain containing 1 6.4757 0.0000
6 ENSMUSG00000081465 Gm12884 predicted gene 12884 6.4757 0.0000
7 ENSMUSG00000083901 Gm12885 predicted gene 12885 6.4757 0.0000
8 ENSMUSG00000083941 Gm12889 predicted gene 12889 6.4757 0.0000
9 ENSMUSG00000040540 Ctdsp2-ps CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, pseudogene 6.4739 0.0000
10 ENSMUSG00000100310 Gm19641 predicted gene, 19641 6.4178 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000068798 Rap1a RAS-related protein 1a -4.3975 0.0000
50599 ENSMUSG00000097271 Gm9903 predicted gene 9903 -4.3934 0.0000
50598 ENSMUSG00000052779 4833418N17Rik RIKEN cDNA 4833418N17 gene -4.3932 0.0000
50597 ENSMUSG00000080782 Gm13495 predicted gene 13495 -4.3931 0.0000
50596 ENSMUSG00000036249 Rbm43 RNA binding motif protein 43 -4.3931 0.0000
50595 ENSMUSG00000098552 Gm27217 predicted gene 27217 -4.3923 0.1592
50594 ENSMUSG00000093673 Gm20644 predicted gene 20644 -4.3923 0.0000
50593 ENSMUSG00000048065 Cyb5r2 cytochrome b5 reductase 2 -4.3923 0.1592
50592 ENSMUSG00000035580 Kcnh8 potassium voltage-gated channel, subfamily H (eag-related), member 8 -4.3923 0.1592
50591 ENSMUSG00000030213 Atf7ip activating transcription factor 7 interacting protein -4.3923 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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