Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026496

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026496


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M4Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000093052 Gm24816 predicted gene, 24816 8.1705 0.0000
2 ENSMUSG00000101102 Gm28609 predicted gene 28609 7.5774 0.0000
3 ENSMUSG00000051986 A530006G24Rik RIKEN cDNA A530006G24 gene 7.4936 0.0000
4 ENSMUSG00000081882 Gm14294 predicted gene 14294 7.4757 0.0000
5 ENSMUSG00000100837 1700063D05Rik RIKEN cDNA 1700063D05 gene 7.3500 0.0000
6 ENSMUSG00000029507 Pus1 pseudouridine synthase 1 7.3265 0.0000
8 ENSMUSG00000031821 Gins2 GINS complex subunit 2 (Psf2 homolog) 7.2972 0.0000
9 ENSMUSG00000097773 Gm10614 predicted gene 10614 7.2972 0.0000
10 ENSMUSG00000110239 Gm45620 predicted gene 45620 7.2961 0.0000
50591 ENSMUSG00000089945 Pakap paralemmin A kinase anchor protein -5.1837 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000071708 Sms spermine synthase -5.2018 0.0000
50599 ENSMUSG00000021250 Fos FBJ osteosarcoma oncogene -5.2018 0.0000
50598 ENSMUSG00000028284 Map3k7 mitogen-activated protein kinase kinase kinase 7 -5.1993 0.0000
50597 ENSMUSG00000035314 Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 -5.1968 0.0000
50596 ENSMUSG00000070436 Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 -5.1963 0.0000
50595 ENSMUSG00000024068 Spast spastin -5.1934 0.0000
50594 ENSMUSG00000003279 Dlgap1 DLG associated protein 1 -5.1885 0.0000
50593 ENSMUSG00000051557 Pusl1 pseudouridylate synthase-like 1 -5.1845 0.0000
50592 ENSMUSG00000090053 Pakap paralemmin A kinase anchor protein -5.1837 0.0000
50591 ENSMUSG00000089945 Pakap paralemmin A kinase anchor protein -5.1837 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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