Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026497

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026497


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M5Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000043583 4930470P17Rik RIKEN cDNA 4930470P17 gene 8.1898 0.0000
2 ENSMUSG00000081026 Gm11855 predicted gene 11855 8.1370 0.0000
3 ENSMUSG00000094515 Gm24567 predicted gene, 24567 8.1370 0.0000
4 ENSMUSG00000093100 Mir3971 microRNA 3971 7.8138 0.0000
5 ENSMUSG00000065656 Gm23104 predicted gene, 23104 7.8009 0.0000
6 ENSMUSG00000000730 Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like 7.7814 0.0000
7 ENSMUSG00000070280 Slc22a14 solute carrier family 22 (organic cation transporter), member 14 7.7145 0.0000
8 ENSMUSG00000082924 Gm11462 predicted gene 11462 7.7091 0.0000
9 ENSMUSG00000098097 6530403H02Rik RIKEN cDNA 6530403H02 gene 7.7074 0.0000
10 ENSMUSG00000042349 Ikbke inhibitor of kappaB kinase epsilon 7.6935 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000096948 Gm4221 predicted gene 4221 -5.9848 0.0000
50599 ENSMUSG00000052713 Zfp608 zinc finger protein 608 -5.9848 0.0000
50598 ENSMUSG00000045744 Bricd5 BRICHOS domain containing 5 -5.9840 0.0000
50597 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 -5.9827 0.0000
50596 ENSMUSG00000038046 Mrm3 mitochondrial rRNA methyltransferase 3 -5.9805 0.0000
50595 ENSMUSG00000031399 Fam3a family with sequence similarity 3, member A -5.9793 0.0000
50594 ENSMUSG00000004221 Ikbkg inhibitor of kappaB kinase gamma -5.9793 0.0000
50593 ENSMUSG00000053358 Gm9905 predicted gene 9905 -5.9792 0.0000
50592 ENSMUSG00000021940 Ptpn20 protein tyrosine phosphatase, non-receptor type 20 -5.9792 0.0000
50591 ENSMUSG00000087357 Gm12498 predicted gene 12498 -5.9773 0.0039

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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