Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026498

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026498


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M6Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000032750 Gab3 growth factor receptor bound protein 2-associated protein 3 7.6865 0.0000
2 ENSMUSG00000031549 Ido2 indoleamine 2,3-dioxygenase 2 7.6366 0.0000
3 ENSMUSG00000074595 Wfdc6a WAP four-disulfide core domain 6A 7.4978 0.0000
4 ENSMUSG00000081565 Rps12-ps5 ribosomal protein S12, pseudogene 5 7.4294 0.0000
5 ENSMUSG00000101886 Gm28324 predicted gene 28324 7.4005 0.0000
6 ENSMUSG00000046721 Rpl14-ps1 ribosomal protein L14, pseudogene 1 7.3337 0.0000
7 ENSMUSG00000084466 Gm22960 predicted gene, 22960 7.3219 0.0000
8 ENSMUSG00000022546 Gpt glutamic pyruvic transaminase, soluble 7.2761 0.0000
9 ENSMUSG00000092116 Gm10320 predicted pseudogene 10320 7.2595 0.0000
10 ENSMUSG00000045345 9530056K15Rik RIKEN cDNA 9530056K15 gene 7.1396 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000022223 Sdr39u1 short chain dehydrogenase/reductase family 39U, member 1 -5.5221 0.0000
50599 ENSMUSG00000018776 Slc35g3 solute carrier family 35, member G3 -5.5216 0.0000
50598 ENSMUSG00000106905 Gm42741 predicted gene 42741 -5.5187 0.0000
50597 ENSMUSG00000024966 Stip1 stress-induced phosphoprotein 1 -5.5184 0.0000
50596 ENSMUSG00000001761 Smo smoothened, frizzled class receptor -5.5165 0.0000
50595 ENSMUSG00000039330 Tsga10ip testis specific 10 interacting protein -5.5149 0.0000
50594 ENSMUSG00000041782 Lad1 ladinin -5.5130 0.0001
50593 ENSMUSG00000026398 Nr5a2 nuclear receptor subfamily 5, group A, member 2 -5.5126 0.0000
50592 ENSMUSG00000046591 Ticrr TOPBP1-interacting checkpoint and replication regulator -5.5066 0.0000
50591 ENSMUSG00000097974 Gm10605 predicted gene 10605 -5.5017 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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