Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026499

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026499


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M7Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105147 Ckb-ps1 creatine kinase, brain, pseudogene 1 8.6958 0.0000
2 ENSMUSG00000105473 Mark1-ps1 MAP/microtubule affinity regulating kinase 1, pseudogene 1 8.6958 0.0000
3 ENSMUSG00000077578 Gm25631 predicted gene, 25631 8.5527 0.0000
4 ENSMUSG00000081565 Rps12-ps5 ribosomal protein S12, pseudogene 5 8.2844 0.0000
5 ENSMUSG00000080441 Mir1249 microRNA 1249 8.0768 0.0000
6 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.9009 0.0000
7 ENSMUSG00000091955 Gm9844 predicted pseudogene 9844 7.8611 0.0000
8 ENSMUSG00000108302 Gm18207 predicted gene, 18207 7.8611 0.0000
9 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 7.7458 0.0000
10 ENSMUSG00000084918 Gm12708 predicted gene 12708 7.7347 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000063015 Ccni cyclin I -6.1699 0.0000
50599 ENSMUSG00000029384 2010109A12Rik RIKEN cDNA 2010109A12 gene -6.1699 0.0000
50598 ENSMUSG00000022523 Fgf12 fibroblast growth factor 12 -6.1699 0.0000
50597 ENSMUSG00000021963 Sap18 Sin3-associated polypeptide 18 -6.1699 0.0003
50596 ENSMUSG00000021772 Nkiras1 NFKB inhibitor interacting Ras-like protein 1 -6.1691 0.0000
50595 ENSMUSG00000087205 4930445N08Rik RIKEN cDNA 4930445N08 gene -6.1687 0.0000
50594 ENSMUSG00000009207 Lnpk lunapark, ER junction formation factor -6.1687 0.0000
50593 ENSMUSG00000098340 Gm27253 predicted gene 27253 -6.1655 0.0000
50592 ENSMUSG00000110387 Gm45478 predicted gene 45478 -6.1649 0.0000
50591 ENSMUSG00000023467 Tulp2 tubby-like protein 2 -6.1649 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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