Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026501

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026501


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M9Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000051900 Abca16 ATP-binding cassette, sub-family A (ABC1), member 16 8.1384 0.0000
2 ENSMUSG00000081465 Gm12884 predicted gene 12884 8.0553 0.0000
3 ENSMUSG00000083901 Gm12885 predicted gene 12885 8.0553 0.0000
4 ENSMUSG00000083941 Gm12889 predicted gene 12889 8.0553 0.0000
5 ENSMUSG00000096704 Gm24805 predicted gene, 24805 7.7074 0.0000
6 ENSMUSG00000065532 Mir187 microRNA 187 7.3309 0.0000
7 ENSMUSG00000106994 Gm10829 predicted gene 10829 7.3219 0.0000
8 ENSMUSG00000068680 Gm10248 predicted gene 10248 7.3038 0.0000
9 ENSMUSG00000098248 Gm27222 predicted gene 27222 7.2668 0.0000
10 ENSMUSG00000027107 Chrna1 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 7.1312 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000033352 Map2k4 mitogen-activated protein kinase kinase 4 -4.2331 0.0000
50599 ENSMUSG00000084898 Gm12371 predicted gene 12371 -4.2290 0.0000
50598 ENSMUSG00000032017 Grik4 glutamate receptor, ionotropic, kainate 4 -4.2284 0.0000
50597 ENSMUSG00000057522 Spop speckle-type BTB/POZ protein -4.2278 0.0000
50596 ENSMUSG00000100959 Gm7654 predicted gene 7654 -4.2267 0.0000
50595 ENSMUSG00000097744 D030040B21Rik RIKEN cDNA D030040B21 gene -4.2267 0.0000
50594 ENSMUSG00000079658 Eloc elongin C -4.2267 0.0000
50593 ENSMUSG00000055652 Klhl25 kelch-like 25 -4.2256 0.0000
50592 ENSMUSG00000003062 Stard3nl STARD3 N-terminal like -4.2239 0.0000
50591 ENSMUSG00000049354 Dcaf7 DDB1 and CUL4 associated factor 7 -4.2198 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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