Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026504

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026504


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M12Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105775 Gm10290 predicted pseudogene 10290 8.0168 0.0000
2 ENSMUSG00000088478 Mir1946b microRNA 1946b 7.8887 0.0000
3 ENSMUSG00000090381 Gm6158 predicted gene 6158 7.7549 0.0000
4 ENSMUSG00000025497 Cdhr5 cadherin-related family member 5 7.5430 0.0000
5 ENSMUSG00000037820 Tgm2 transglutaminase 2, C polypeptide 7.4696 0.0000
6 ENSMUSG00000108149 Olfr439-ps1 olfactory receptor 439, pseudogene 1 7.4512 0.0000
7 ENSMUSG00000021298 Gpr132 G protein-coupled receptor 132 7.4335 0.0000
8 ENSMUSG00000039934 Gsap gamma-secretase activating protein 7.4094 0.0000
9 ENSMUSG00000107450 Gm2522 predicted gene 2522 7.4094 0.0000
10 ENSMUSG00000102998 Gm37763 predicted gene, 37763 7.3750 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000026142 Rhbdd1 rhomboid domain containing 1 -6.0025 0.0000
50599 ENSMUSG00000026504 Sdccag8 serologically defined colon cancer antigen 8 -6.0009 0.0000
50598 ENSMUSG00000101880 Gm29282 predicted gene 29282 -6.0000 0.0000
50597 ENSMUSG00000096199 Ptrhd1 peptidyl-tRNA hydrolase domain containing 1 -6.0000 0.0000
50596 ENSMUSG00000036769 Wdr44 WD repeat domain 44 -6.0000 0.0219
50595 ENSMUSG00000026087 Mrpl30 mitochondrial ribosomal protein L30 -6.0000 0.0000
50594 ENSMUSG00000007564 Ppp2r1a protein phosphatase 2, regulatory subunit A, alpha -6.0000 0.0000
50593 ENSMUSG00000099329 Gm28052 predicted gene, 28052 -5.9999 0.0000
50592 ENSMUSG00000042724 Map3k9 mitogen-activated protein kinase kinase kinase 9 -5.9990 0.0000
50591 ENSMUSG00000069495 Epc2 enhancer of polycomb homolog 2 -5.9962 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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