Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042047

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042047


Profile download
7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M20Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 4.8074 0.0000
2 ENSG00000201586 RNU6-593P RNA, U6 small nuclear 593, pseudogene 4.6439 0.0000
3 ENSG00000232293 PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 4.6439 0.0000
4 ENSG00000212485 RNU6-1197P RNA, U6 small nuclear 1197, pseudogene 4.5236 0.0000
5 ENSG00000224228 novel transcript 4.5236 0.0000
6 ENSG00000228914 OR1H1P olfactory receptor family 1 subfamily H member 1 pseudogene 4.5236 0.0000
7 ENSG00000240992 RPS23P4 ribosomal protein S23 pseudogene 4 4.4799 0.0000
8 ENSG00000203942 C10orf62 chromosome 10 open reading frame 62 4.4594 0.0000
9 ENSG00000214391 TUBAP2 tubulin alpha pseudogene 2 4.4594 0.0000
10 ENSG00000249967 novel protein 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270948 MTDHP1 metadherin pseudogene 1 -3.1699 1.0000
63172 ENSG00000269906 novel transcript, sense intronic to SAV1 -3.1699 1.0000
63171 ENSG00000268296 novel transcript -3.1699 1.0000
63170 ENSG00000267708 RDM1P3 RDM1 pseudogene 3 -3.1699 0.6224
63169 ENSG00000266448 myelin transcription factor 1-like (MYT1L) pseudogene -3.1699 0.4080
63168 ENSG00000266162 YWHAEP2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 2 -3.1699 1.0000
63167 ENSG00000265168 novel transcript, antisense to ALDOC -3.1699 1.0000
63166 ENSG00000264644 KRT18P8 keratin 18 pseudogene 8 -3.1699 1.0000
63165 ENSG00000264488 novel transcript -3.1699 1.0000
63164 ENSG00000264104 SECIS binding protein 2 (SECISBP2) pseudogene -3.1699 0.6224

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...